Table 2.

Concordance of methylation data across experiments

SampleGenotypeSMSPSMSP (SNP)MethyLight
1CC0.2%
2CC0.1%
3CC0.1%
4CC0.2% G
5CC0.1% G
6TT0.1%3.1% A0.2%
7CT9.7%4.5% A3.1%
8CT8.4%2.5% A0.2%
9CT0.8%0.1% A1.2%
10CT0.4%1.7% A0.2%
11CT0.2%0.1% A0.1%
12CT0.1%0.1% AND
13CT0.8% A
14CT
15CT
16CTND

NOTE: The results of three separate assays are summarized. All the CT and TT samples are shown. In addition, all CC samples that displayed methylation are shown. The SMSP column shows results from the first SMART-MSP assay, the SMSP (SNP) column shows results from the second SMART-MSP assay that contains the SNP. The column also shows the allele (antisense) detected by HRM and sequencing.

Abbreviations: −, no methylation detected; ND, not done.